Having just had a very unhappy horse due to a stomach full of bot fly larvae (which don’t show on FEC) and associated ulcers they either caused or exacerbated (plus associated very expensive vet bills), yes you absolutely should if you live in an area where they are a problem. They are not detectable by FEC. I’m now in southern CA, where we don’t have problems with bot flies, so I worry about this less now (horse came from a region where bot flies are common), but I will still treat at least once a year for tapeworms.
With more companies offering mail-in FEC tests for a reasonable price, hopefully more people will start using them, but it all comes down to education and if vets are recommending them, many people aren’t going to get educated. And I’m sure many vets won’t recommend the mail in kits because it doesn’t make them any money…and the vet FECs are a hassle and financially not practical for many people.