Here are directions from my county’s health department website:
Following are the instructions the Health Department sends to homeowners who need to disinfect their well. These instructions should be used to disinfect after a positive bacteria sample, after replacing a well pump, or after doing any other work to the well:
Method for Disinfection of Water Supply
Chlorinating is an important step in making your water supply safe for human consumption. The Procedure for chlorinating is as follows:
Turn off the circuit breaker for the hot water heater, or in the case of a gas water heater, turn the water heater to pilot. Remove the well cap, or for and older well, remove the vent plug in the sanitary seal.
Add two (2) ounces (by weight) of calcium hypochlorite tablets (preferred) or granules (also known as swimming pool shock) directly to the well. These can be obtained where pool supplies are sold. Do not use slow release chlorine tablets designed for swimming pool chlorine feeders.
In addition, use three (3) ounces of fresh 5.25% household bleach for every ten (10) feet of water in your well. Use a minimum of one-half (1/2) gallon. If you cannot find tablets or granules, increase the amount bleach by 50% (i.e. 100 oz. increase to 150 oz.). Dilute the bleach with a gallon of water. Pour the mixture directly into the well, making sure the solution coats the inside of the casing. In some older wells, the chlorine solution may have to be added through the vent plug on top of the sanitary seal.
After the chlorine has been added, wait thirty (30) minutes, then run the water using an outside faucet until there is a chlorine smell. If chlorine is not apparent after an hour, turn the water off for fifteen (15) minutes, then run the water again for up to one hour, repeating this process until the chlorine smell is present.
Run every faucet until a chlorine smell is detected. This should include hot water taps, outside taps, barn taps, showerheads, and the taps at the bottom of the hot water heater and pressure tank. After the chlorine is detected, close each tap. Any appliances attached to the system such as dishwashers, ice makers, washing machines, furnace humidifiers, etc. should be cycled until chlorinated water has moved through the unit.* When all parts of your water system have been chlorinated, attach a garden hose to an outside tap and run chlorinated water down the well for 1 minute, moving the end of the hose around the inside of the well casing. Discontinue immediately if the water becomes cloudy.
Allow the water to remain in the plumbing system for at least 12 hours. Except for flushing toilets, no water should be used during that 12-hour period. At the end of this period, the chlorinated water should be run off. This should be done intermittently (run water no longer than one hour each time). An outside tap with an attached hose directed away from the house should be used, if possible, to prevent overloading the septic system. You should continue this process periodically until no chlorine smell is present. This process may take several days. The chlorine concentration will initially be very high, and it is strongly recommended that people refrain from using the water for bathing or laundry until the chlorine odor is gone.
When you finish, contact the Health Department for a follow-up water sample. The Health Department will normally require a 14-day waiting period after chlorination, before a follow-up water sample will be taken. This is to ensure that the sample is representative of the normal condition of the water supply. The water supply should be considered unsafe until it has been sampled and determined to be safe by the Health Department or another State-certified lab.
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Please, consult with a plumber or other water service technician before
disinfection of any water treatment equipment.